|
Publication List
Journals
(* Authors initials are explained at
bottom of page)
| Authors |
Year |
Title |
Journal |
Volume |
Pages |
Abstract / Full Text |
|
LSW, DVS, APA
|
2003 |
Theoretical Design of a Gene Therapy To
Prevent AIDS but Not Human Immunodeficiency Virus Type 1
Infection |
Journal of Virology |
77(18) |
10028-10036 |
[PDF-906kb]
|
|
DMW, APA
|
2003 |
Motifs, modules and games in bacteria |
Current Opinion in Microbiology |
6(2) |
125-134 |
[PDF-273kb]
|
|
MH, APA, JLK,
et al.
|
2003 |
The systems biology markup language
(SBML): a medium for representation and exchange of
biochemical network models |
Bioinformatics |
19(4) |
524-531 |
[PDF-103kb]
|
| CR, APA |
2003 |
Stochastic Chemical Kinetics and the Quasi-Steady-State
Assumption |
Journal of Chemical Physics |
118(11) |
4999-5010 |
[PDF-157kb]
|
|
CR, DMW, APA
|
2002 |
Control, exploitation and tolerance of
intracellular noise |
Nature |
420 |
231-238 |
[PDF-538kb]
|
|
WV, APA,
JR
|
2002 |
Determination of causal connectivities of species
in reaction networks |
PNAS |
99(9) |
5816-5821 |
[Abstract]
[PDF-314kb]
|
|
MS, APA,
JR
|
2002 |
Signal Processing by Simple Chemical Systems |
Journal of Physical Chemistry A |
106 |
10205-10221 |
[PDF-220kb]
|
|
GG, APA, PF,
et al.
|
2002 |
Functional profiling of the
Saccharomyces cerevisiae genome |
Nature |
418 |
387-391 |
[PDF-317kb]
|
|
AG, APA
|
2002 |
Genetic "Code": Representations and
Dynamical Models of Genetic Components and Networks |
Annu. Rev. Genomics Hum. Genet. |
3 |
341-369 |
[PDF-360kb]
|
| DMW, APA |
2002 |
15 minutes of fim: Control of Phase Variation in E.
coli |
OMICS |
6(1) |
91-114 |
[PDF-783kb]
|
| APA |
2001 |
Synthetic Cell Biology |
Current Opinion in Biotechnology |
12 |
638-644 |
[PDF-67kb]
|
| CR, APA |
2001 |
Control motifs for intracellular regulatory networks |
Annual Review of Biomedical Engineering |
3 |
391-419 |
[PubMed]
[PDF-337kb]
|
| MS, APA,JR |
2001 |
On the deduction of chemical reaction pathways from
measurements of time-series of concentrations. |
Chaos |
11(1) |
108-114 |
[PDF-379kb]
|
| HHM, APA |
2000 |
Towards a circuit engineering discipline. |
Current Biology |
10(8) |
R318-20 |
[PubMed]
[PDF-94kb]
|
| HHM, APA |
1999 |
It's a noisy business! Genetic regulation at the nanomolar
scale. |
Trends in Genetics |
15(2) |
65-69 |
[PubMed]
[PDF-164kb]
|
| APA, JR, HHM |
1998 |
Stochastic kinetic analysis of pathway bifurcation
in phage lambda-infected Escherichia coli cells. |
Genetics |
149(4) |
1633-48 |
[PubMed]
[Genetics]
[PDF-347kb]
|
| HHM, APA |
1998 |
Simulation of prokaryotic genetic circuits |
Annual Review of Biophysics and Biomolecular Structure |
27 |
199-224 |
[PubMed]
[ARBBS]
[PDF-339kb]
|
| CAS, APA, JR |
1997 |
An endogenous calcium oscillator may control early
embryonic division |
PNAS |
94(4) |
1194-1199 |
[PubMed]
[PNAS]
[PDF-256kb]
|
| APA, PDS, JR |
1997 |
A test case of correlation metric construction of
a reaction pathway from measurements |
Science |
77(5330) |
1275-1279 |
[Science]
[PDF-573kb] |
| HHM, APA |
1997 |
Stochastic mechanisms in gene expression |
PNAS |
94(3) |
814-819 |
[PubMed]
[PNAS]
[PDF-387kb]
|
| APA, JR |
1995 |
Statistical construction of chemical reaction mechanisms
from measured time series |
Journal of Physical Chemistry |
99(3) |
970-979 |
[PDF-3Mb] |
| APA, JR |
1994 |
Computational functions in biochemical reaction networks |
Biophysical Journal |
67(2) |
560-578 |
[PubMed] |
| APA, DYC |
1992 |
An algorithm for protein engineering |
PNAS |
89(16) |
7811-7815 |
[PubMed]
[PNAS] |
| APA, DYC |
1992 |
Optimizing nucleotide mixtures to encode specific
subsets of amino acids for semi-random mutagenesis |
Biotechnology |
10(3) |
297-300 |
[PubMed] |
| APA, ..., DYC |
1990 |
Applications of imaging spectroscopy in molecular
biology. II. Colony screening based on absorption spectra. |
Biotechnology |
8(8) |
746-749 |
[PubMed] |
BookChapters
(* Authors initials are explained
at bottom of page)
| Authors |
Year |
Title |
Book |
Editors |
ISBN |
Info |
| APA |
2000 |
Signal Processing in Biochemical Reaction Networks |
Self-Organized Biological Dynamics and Nonlinear
Control |
J. Walleczek |
0521-6243-63 |
[Amazon]
[PDF-11Mb] |
| APA, DCY |
1992 |
Digital Imaging Spectroscopy |
The Photosynthetic Reaction Center |
J. Deisenhofer, J.R. Norris |
0122-0866-00 |
[Amazon] |
Conference Proceedings
(* Authors initials are
explained at bottom of page)
| Authors |
Year |
Title |
Book |
Editors |
ISBN |
Info |
| APA, ..., DCY |
1992 |
Recursive Ensemble Mutagenesis: A Combinatorial Optimization
Technique For Protein Engineering |
Parallel Problem Solving from Nature II. Proceedings
of the Second International Conference on Parallel Problem Solving
from Nature. |
R. Maenner, B. Manderick |
0521-6243-63 |
[Amazon] |
| Initials |
Author |
| APA |
Adam P. Arkin |
| AG |
Alex Gilman |
| CAS |
Craig A. Swanson |
| CR |
Christopher Rao |
| DCY |
Douglas C. Youvan |
| DMW |
Denise Wolf |
| DVS |
David V. Schaffer |
| GG |
Guri Giaever |
| HHM |
Harley H. McAdams |
| JLK |
Jay L. Kasberger |
| JR |
John Ross |
| LSW |
Leor S. Weinberger |
| MH |
Michael Hucka |
| MS |
Michael Samoilov |
| PDS |
Pei-Dong Shen |
| PF |
Patrick Flaherty |
| WV |
William Vance |
|
