locusId sysName desc name lrn t short Group Condition_1 Concentration_1 Units_1 Condition_2 Concentration_2 Units_2 BPHYT_RS00130 BPHYT_RS00130 ATPase P set1IT037 -6.33027819291363 -11.1511116596442 Zinc 0.5 mM stress Zinc sulfate heptahydrate 0.5 mM NA NA NA BPHYT_RS00310 BPHYT_RS00310 hypothetical protein set2IT072 -1.59568322162683 -8.29393380332327 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS00600 BPHYT_RS00600 histidine kinase set3IT065 1.06994586200946 5.52730257118389 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS00915 BPHYT_RS00915 IclR family transcriptional regulator set2IT076 -1.9144533988398 -8.29533658833639 L-Arginine (C) carbon source L-Arginine 20 mM NA NA NA BPHYT_RS00915 BPHYT_RS00915 IclR family transcriptional regulator set1IT021 -1.43739467324887 -7.15718189505612 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS00965 BPHYT_RS00965 ArsR family transcriptional regulator set1IT036 7.33338279286244 41.6911068675872 Thallium(I) acetate 0.01 mg/ml stress Thallium(I) acetate 0.01 mg/ml NA NA NA BPHYT_RS01500 BPHYT_RS01500 7-cyano-7-deazaguanine synthase set2IT080 -1.54851410961595 -11.6932679495944 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS01510 BPHYT_RS01510 6-carboxy-5,6,7,8-tetrahydropterin synthase set2IT080 -1.48408906930392 -7.23768437843409 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS01685 BPHYT_RS01685 phytanoyl-CoA dioxygenase set1IT027 -2.56476515638569 -13.0870668476696 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS01685 BPHYT_RS01685 phytanoyl-CoA dioxygenase set3IT062 -1.85393020841622 -7.88957131640651 L-Glutamine (N) nitrogen source L-Glutamine 20 mM NA NA NA BPHYT_RS01685 BPHYT_RS01685 phytanoyl-CoA dioxygenase set3IT061 -1.73098700952628 -7.24451588675432 L-Asparagine (N) nitrogen source L-Asparagine 20 mM NA NA NA BPHYT_RS01695 BPHYT_RS01695 L-glyceraldehyde 3-phosphate reductase set2IT079 1.09385304634476 6.59283823488255 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS01920 BPHYT_RS01920 AsnC family transcriptional regulator set1IT024 -6.69402235405695 -12.0473819943353 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS01935 BPHYT_RS01935 lipoprotein set2IT083 1.40063015357633 9.44376473613328 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS02015 BPHYT_RS02015 MFS transporter set1IT024 -5.01955435688937 -11.5136861016778 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS02015 BPHYT_RS02015 MFS transporter set3IT066 -1.83268749713828 -10.2100820842353 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS02045 BPHYT_RS02045 sugar kinase set1IT002 -5.14576060637626 -7.77961934839323 D-Fructose (C) carbon source D-Fructose 20 mM NA NA NA BPHYT_RS02045 BPHYT_RS02045 sugar kinase set1IT014 -6.57387023579831 -6.39625059137988 D-Mannitol (C) carbon source D-Mannitol 20 mM NA NA NA BPHYT_RS02045 BPHYT_RS02045 sugar kinase set1IT029 -6.80505277273797 -6.62118679875505 D-Mannose (C) carbon source D-Mannose 20 mM NA NA NA BPHYT_RS02045 BPHYT_RS02045 sugar kinase set1IT016 -7.58806484917784 -5.24001353229735 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS02050 BPHYT_RS02050 N-acylglucosamine 2-epimerase set1IT016 -2.94273246834292 -5.69671188480618 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS02050 BPHYT_RS02050 N-acylglucosamine 2-epimerase set1IT002 -3.07556463690502 -5.379383937198 D-Fructose (C) carbon source D-Fructose 20 mM NA NA NA BPHYT_RS02050 BPHYT_RS02050 N-acylglucosamine 2-epimerase set1IT029 -5.39276867071976 -13.0162205284004 D-Mannose (C) carbon source D-Mannose 20 mM NA NA NA BPHYT_RS02050 BPHYT_RS02050 N-acylglucosamine 2-epimerase set1IT014 -4.08807340468234 -11.1938817300455 D-Mannitol (C) carbon source D-Mannitol 20 mM NA NA NA BPHYT_RS02165 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase set3IT061 -1.88556496883868 -7.41545099059096 L-Asparagine (N) nitrogen source L-Asparagine 20 mM NA NA NA BPHYT_RS02165 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase set3IT063 -1.83102882161391 -6.22570603554539 L-Proline (N) nitrogen source L-Proline 20 mM NA NA NA BPHYT_RS02165 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase set3IT062 -3.57402137294243 -10.5575611535537 L-Glutamine (N) nitrogen source L-Glutamine 20 mM NA NA NA BPHYT_RS02165 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase set5IT078 -2.35675268616917 -7.06677778497093 No vitamins t2 vitamin NA NA NA NA BPHYT_RS02240 BPHYT_RS02240 isocitrate dehydrogenase kinase/phosphatase set1IT017 -1.92020264946262 -7.55264474844163 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS02510 BPHYT_RS02510 C4-dicarboxylate ABC transporter set1IT013 -1.76451547062943 -8.63816159886562 succinate (C) carbon source Sodium succinate dibasic hexahydrate 20 mM NA NA NA BPHYT_RS02510 BPHYT_RS02510 C4-dicarboxylate ABC transporter set1IT018 -4.07630792753688 -13.6919049840275 L-Malic (C) carbon source L-Malic acid disodium salt monohydrate 20 mM NA NA NA BPHYT_RS02515 BPHYT_RS02515 ATPase set1IT013 -1.80764711343262 -11.2997014568353 succinate (C) carbon source Sodium succinate dibasic hexahydrate 20 mM NA NA NA BPHYT_RS02515 BPHYT_RS02515 ATPase set1IT018 -3.56174240488812 -17.0542359678487 L-Malic (C) carbon source L-Malic acid disodium salt monohydrate 20 mM NA NA NA BPHYT_RS02520 BPHYT_RS02520 Fis family transcriptional regulator set1IT013 -1.96640968264672 -7.18211055327878 succinate (C) carbon source Sodium succinate dibasic hexahydrate 20 mM NA NA NA BPHYT_RS02520 BPHYT_RS02520 Fis family transcriptional regulator set1IT018 -3.04917987266878 -5.26843955211636 L-Malic (C) carbon source L-Malic acid disodium salt monohydrate 20 mM NA NA NA BPHYT_RS02560 BPHYT_RS02560 glutathione synthetase set1IT034 3.02500640981726 23.8518220275128 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS02680 BPHYT_RS02680 cytochrome C oxidase subunit I set1IT021 -1.35135104331275 -6.34476110390814 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS02730 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase set3IT075 -2.54858272455587 -10.1326448488911 NAG (N) nitrogen source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02730 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase set1IT028 -3.14341170597337 -12.3872618722292 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02730 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase set2IT080 -1.13015998198955 -7.35473255166882 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS02735 BPHYT_RS02735 iron dicitrate transport regulator FecR set1IT028 -4.01588150040354 -6.59070172810916 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02735 BPHYT_RS02735 iron dicitrate transport regulator FecR set3IT075 -3.62462773255918 -9.58573011763784 NAG (N) nitrogen source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02735 BPHYT_RS02735 iron dicitrate transport regulator FecR set2IT079 -3.6047239464065 -8.85592236313532 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS02740 BPHYT_RS02740 PTS glucose transporter subunit IIA set1IT028 -2.35258072046678 -6.95053575307752 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02745 BPHYT_RS02745 PTS system N-acetylglucosamine-specific transporter subunit IIBC set3IT075 -2.49107651918211 -7.73061796772886 NAG (N) nitrogen source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02745 BPHYT_RS02745 PTS system N-acetylglucosamine-specific transporter subunit IIBC set1IT028 -2.64385425874688 -6.73501218164628 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS02815 BPHYT_RS02815 methyltransferase set2IT053 1.82865469341861 8.13364165542554 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS03135 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase set2IT079 1.16963101824594 8.53035031794786 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS03135 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase set2IT080 -1.35890452644726 -6.6954861518706 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS03160 BPHYT_RS03160 hypothetical protein set1IT036 -1.33449926674035 -5.43781839225961 Thallium(I) acetate 0.01 mg/ml stress Thallium(I) acetate 0.01 mg/ml NA NA NA BPHYT_RS03175 BPHYT_RS03175 sterol-binding protein set1IT045 -2.15648175623732 -7.56644541899441 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS03210 BPHYT_RS03210 cardiolipin synthetase set1IT021 1.24423027272366 7.09616761707984 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS03220 BPHYT_RS03220 acyl-CoA dehydrogenase set1IT017 -2.74271732950626 -7.18208186013711 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS03220 BPHYT_RS03220 acyl-CoA dehydrogenase set2IT072 -1.09903043094816 -6.39657249520554 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS03220 BPHYT_RS03220 acyl-CoA dehydrogenase set1IT034 1.3591659313948 9.97518161435343 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS03285 BPHYT_RS03285 aminoglycoside phosphotransferase set1IT045 -1.37901922992032 -6.57674750181934 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS03470 BPHYT_RS03470 LysR family transcriptional regulator set1IT045 1.24907642870941 6.13309622014007 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS03470 BPHYT_RS03470 LysR family transcriptional regulator set2IT080 1.48520278211022 9.02394672883576 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS03560 BPHYT_RS03560 DNA repair protein set2IT053 -2.19631101236961 -10.8109097362947 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS03780 BPHYT_RS03780 acyl-CoA dehydrogenase set1IT025 -3.69824525038469 -7.51218656534156 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS03815 BPHYT_RS03815 MFS transporter permease set1IT034 -4.00638175491595 -6.85073723124072 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS03975 BPHYT_RS03975 AraC family transcriptional regulator set2IT073 1.80084150506767 8.89364815878815 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS03975 BPHYT_RS03975 AraC family transcriptional regulator set2IT070 1.34451349075965 5.45441816020636 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS03980 BPHYT_RS03980 mannose-1-phosphate guanyltransferase set2IT070 1.27013646555946 8.79244258719473 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS03980 BPHYT_RS03980 mannose-1-phosphate guanyltransferase set2IT073 1.61794696047975 9.55696197127222 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04000 BPHYT_RS04000 GDP-mannose 4,6-dehydratase set2IT073 1.52019443932083 8.17489797042326 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04015 BPHYT_RS04015 glycosyl transferase set2IT073 1.80678278882994 5.2301248386286 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04035 BPHYT_RS04035 transferase set2IT073 1.72283204338698 5.57547483480684 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04045 BPHYT_RS04045 acyltransferase set2IT073 1.66395162338779 8.9218097833964 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04050 BPHYT_RS04050 group 1 glycosyl transferase set2IT070 1.07674399937452 5.91616088844096 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS04050 BPHYT_RS04050 group 1 glycosyl transferase set2IT073 1.46061190712848 8.43625273252147 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04055 BPHYT_RS04055 PST family polysaccharide export protein set2IT070 1.41102283399078 6.19847385113555 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS04055 BPHYT_RS04055 PST family polysaccharide export protein set2IT073 1.4564614947722 9.50812548530896 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS04125 BPHYT_RS04125 hypothetical protein set3IT065 1.04263690720064 5.15172609069601 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS04350 BPHYT_RS04350 membrane protein set1IT028 -2.36861503817402 -11.8826697162055 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS04350 BPHYT_RS04350 membrane protein set1IT024 -2.75478073554355 -13.4719689571068 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS04350 BPHYT_RS04350 membrane protein set3IT064 -1.91202321728733 -7.6843676613496 L-Alanine (N) nitrogen source L-Alanine 20 mM NA NA NA BPHYT_RS04350 BPHYT_RS04350 membrane protein set1IT026 -2.7328502739623 -12.4838955389095 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS04450 BPHYT_RS04450 UDP-glucose 4-epimerase set1IT045 1.18193869713126 7.27199959288758 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS04675 BPHYT_RS04675 protein-L-isoaspartate O-methyltransferase set1IT034 1.36734161080866 6.58582678706876 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS04675 BPHYT_RS04675 protein-L-isoaspartate O-methyltransferase set1IT045 -1.41227054333183 -7.22835145411929 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS05155 BPHYT_RS05155 acetyltransferase GCN5 set2IT053 1.64799905373205 10.9897526874072 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS05215 BPHYT_RS05215 DNA-binding protein set3IT062 -2.08170638776941 -7.79116327999224 L-Glutamine (N) nitrogen source L-Glutamine 20 mM NA NA NA BPHYT_RS05480 BPHYT_RS05480 NAD synthetase set3IT063 -1.36580943487352 -7.06562475991228 L-Proline (N) nitrogen source L-Proline 20 mM NA NA NA BPHYT_RS05675 BPHYT_RS05675 hypothetical protein set1IT021 -1.27519536791543 -6.89377348976964 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS06095 BPHYT_RS06095 esterase set1IT027 -2.1992747767633 -9.9316631074284 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS06155 BPHYT_RS06155 DEAD/DEAH box helicase set1IT043 -1.5625093026347 -5.51949778874284 Benzethonium chloride 0.0016 mM stress Benzethonium chloride 0.0016 mM NA NA NA BPHYT_RS06505 BPHYT_RS06505 TetR family transcriptional regulator set2IT072 -1.34536476691016 -9.22255662317623 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS06505 BPHYT_RS06505 TetR family transcriptional regulator set1IT017 -2.38663415519334 -8.36625550969083 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS06585 BPHYT_RS06585 hypothetical protein set1IT045 -1.48558971249826 -10.8133566818126 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS06790 BPHYT_RS06790 hypothetical protein set1IT041 -1.52377800659509 -6.94687552415433 Chloride 200 mM stress Sodium Chloride 200 mM NA NA NA BPHYT_RS06790 BPHYT_RS06790 hypothetical protein set2IT083 1.52604484169297 9.9019425704292 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS06790 BPHYT_RS06790 hypothetical protein set2IT068 1.62953898632654 10.1615366949999 LB, 37C temperature NA NA NA NA BPHYT_RS06885 BPHYT_RS06885 NADP-dependent aryl-alcohol dehydrogenase set2IT079 1.12785976111706 9.2463542257269 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS06910 BPHYT_RS06910 membrane protein set2IT080 -2.19412806614156 -6.40539900219834 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS06920 BPHYT_RS06920 iron permease FTR1 set3IT070 -3.00970871610654 -7.67489566881248 L-Citrulline (N) nitrogen source L-Citrulline 20 mM NA NA NA BPHYT_RS06920 BPHYT_RS06920 iron permease FTR1 set2IT080 -2.82624912715317 -7.82332756921098 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS06925 BPHYT_RS06925 membrane protein set3IT070 -1.62186911951312 -7.06286071797452 L-Citrulline (N) nitrogen source L-Citrulline 20 mM NA NA NA BPHYT_RS06925 BPHYT_RS06925 membrane protein set2IT080 -2.7406819370909 -8.31923763034321 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS07555 BPHYT_RS07555 histidine ammonia-lyase set4IT036 -1.82349468044733 -6.00887660733781 L-Histidine nutrient L-Histidine 1 mM NA NA NA BPHYT_RS07555 BPHYT_RS07555 histidine ammonia-lyase set1IT019 -9.10925055459468 -6.29449018119217 L-Histidine (C) carbon source L-Histidine 20 mM NA NA NA BPHYT_RS07585 BPHYT_RS07585 N-formylglutamate amidohydrolase set1IT019 -7.59963719862549 -5.11974505430025 L-Histidine (C) carbon source L-Histidine 20 mM NA NA NA BPHYT_RS07680 BPHYT_RS07680 histidine/lysine/arginine/ornithine ABC transporter permease HisM set2IT076 -3.11739371733796 -10.0118189370402 L-Arginine (C) carbon source L-Arginine 20 mM NA NA NA BPHYT_RS07720 BPHYT_RS07720 succinylglutamate desuccinylase set2IT076 -3.6461583543597 -8.81329733685705 L-Arginine (C) carbon source L-Arginine 20 mM NA NA NA BPHYT_RS07735 BPHYT_RS07735 ABC transporter substrate-binding protein set2IT076 -3.20101367923106 -10.885011109491 L-Arginine (C) carbon source L-Arginine 20 mM NA NA NA BPHYT_RS08080 BPHYT_RS08080 tRNA pseudouridine synthase B set1IT034 1.92030384678169 12.5543853799234 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS08455 BPHYT_RS08455 ribonuclease R set1IT023 -1.53762746880424 -9.19380825797638 L-Alanine (C) carbon source L-Alanine 20 mM NA NA NA BPHYT_RS08490 BPHYT_RS08490 Crp/Fnr family transcriptional regulator set2IT073 1.57228301984548 5.65946440095104 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS08570 BPHYT_RS08570 arginyl-tRNA-protein transferase set3IT065 1.00391811131495 5.50827814773272 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS08815 BPHYT_RS08815 L-asparaginase set1IT043 -1.49110998972132 -7.53383794809685 Benzethonium chloride 0.0016 mM stress Benzethonium chloride 0.0016 mM NA NA NA BPHYT_RS08815 BPHYT_RS08815 L-asparaginase set1IT020 -4.01682132766258 -6.08213155925445 L-Asparagine (C) carbon source L-Asparagine 20 mM NA NA NA BPHYT_RS08815 BPHYT_RS08815 L-asparaginase set3IT061 -5.21505597166028 -5.80108492531324 L-Asparagine (N) nitrogen source L-Asparagine 20 mM NA NA NA BPHYT_RS08965 BPHYT_RS08965 molybdenum cofactor biosynthesis protein MoaA set2IT056 -1.9523944662592 -6.32025194862845 LB, pH4 pH NA NA NA NA BPHYT_RS08975 BPHYT_RS08975 molybdenum cofactor biosynthesis protein MoaE set2IT057 -1.59794220240318 -5.70244376292425 LB, pH4 pH NA NA NA NA BPHYT_RS09150 BPHYT_RS09150 acetyl-CoA acetyltransferase set1IT025 -1.29402259674874 -7.30581914546919 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS09190 BPHYT_RS09190 cystathionine beta-lyase set2IT080 2.35713715046238 8.35124384169909 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS09375 BPHYT_RS09375 (2Fe-2S)-binding protein set1IT019 -1.29121265510932 -10.1246298222117 L-Histidine (C) carbon source L-Histidine 20 mM NA NA NA BPHYT_RS09435 BPHYT_RS09435 MarR family transcriptional regulator set2IT077 2.39286805334556 10.7536087430235 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS09510 BPHYT_RS09510 amino acid dehydrogenase set2IT083 1.97661657437263 11.7761790675505 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS09655 BPHYT_RS09655 mechanosensitive ion channel protein MscS set1IT041 -1.07026243566751 -5.03796325063687 Chloride 200 mM stress Sodium Chloride 200 mM NA NA NA BPHYT_RS10285 BPHYT_RS10285 hypothetical protein set3IT056 2.99974541889967 7.63405992712478 L-Lysine (N) nitrogen source L-Lysine 20 mM NA NA NA BPHYT_RS11215 BPHYT_RS11215 ribose ABC transporter ATPase set2IT052 -1.90627786806228 -7.70126523589872 Cephalothin 2 mg/ml stress Cephalothin sodium salt 2 mg/ml NA NA NA BPHYT_RS11215 BPHYT_RS11215 ribose ABC transporter ATPase set5IT078 1.70836367583158 8.59045007356857 No vitamins t2 vitamin NA NA NA NA BPHYT_RS11290 BPHYT_RS11290 bifunctional glyoxylate/hydroxypyruvate reductase B set1IT008 -2.37341713173648 -5.56258459003023 D-Gluconic Acid (C) carbon source D-Gluconic Acid sodium salt 20 mM NA NA NA BPHYT_RS11325 BPHYT_RS11325 voltage-gated chloride channel protein ClcB set2IT072 -1.95085223399777 -8.01538989212789 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS11390 BPHYT_RS11390 penicillin-binding protein 1A set2IT056 -4.56407981180389 -10.4696426504451 LB, pH4 pH NA NA NA NA BPHYT_RS11390 BPHYT_RS11390 penicillin-binding protein 1A set2IT057 -4.7103679896361 -9.5389543833623 LB, pH4 pH NA NA NA NA BPHYT_RS11480 BPHYT_RS11480 heme ABC transporter ATP-binding protein set1IT034 1.63304281743438 5.51949988663679 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS12160 BPHYT_RS12160 peptide deformylase set1IT045 1.32859856702071 7.18069790330363 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS12185 BPHYT_RS12185 succinyldiaminopimelate aminotransferase set3IT061 -1.41613435863671 -6.58465062959847 L-Asparagine (N) nitrogen source L-Asparagine 20 mM NA NA NA BPHYT_RS12235 BPHYT_RS12235 DNA repair protein RadA set2IT053 -2.23797384143276 -7.67184025150719 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS12305 BPHYT_RS12305 malate synthase set1IT017 -2.59668396142207 -7.00724437513176 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS12640 BPHYT_RS12640 phosphoesterase set5IT076 -1.51190175624713 -7.55110477153066 With vitamins t2 vitamin NA NA NA NA BPHYT_RS12820 BPHYT_RS12820 D-alanyl-D-alanine carboxypeptidase set2IT083 1.38711763182482 6.59092299453362 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS12825 BPHYT_RS12825 phasin family protein set2IT079 1.92572648497567 5.6291032442565 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS12955 BPHYT_RS12955 damage-inducible protein set2IT074 -1.21390529198027 -5.27667212548409 m-Inositol (C) carbon source m-Inositol 20 mM NA NA NA BPHYT_RS12965 BPHYT_RS12965 fatty acid hydroxylase set1IT026 -1.490537234827 -6.80528572347341 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS12965 BPHYT_RS12965 fatty acid hydroxylase set3IT068 -2.98396850704577 -8.82566659672896 D-Alanine (N) nitrogen source D-Alanine 20 mM NA NA NA BPHYT_RS12970 BPHYT_RS12970 hypothetical protein set1IT026 -1.64138370008184 -8.29332901775638 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS12970 BPHYT_RS12970 hypothetical protein set3IT068 -3.84585742570337 -11.2779788651782 D-Alanine (N) nitrogen source D-Alanine 20 mM NA NA NA BPHYT_RS13280 BPHYT_RS13280 2-isopropylmalate synthase set3IT065 -2.25859150238751 -8.32612831642015 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS13300 BPHYT_RS13300 phenylhydantoinase set3IT077 -5.36427586423978 -6.18414185439799 Uridine (N) nitrogen source Uridine 20 mM NA NA NA BPHYT_RS13540 BPHYT_RS13540 LysR family transcriptional regulator set1IT024 -1.26133615969401 -7.74562952862604 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS13545 BPHYT_RS13545 3-hydroxyacyl-CoA dehydrogenase set1IT024 -2.13299889754859 -9.58531021309169 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS13655 BPHYT_RS13655 GTP pyrophosphokinase set3IT064 -3.99805511996403 -14.0222677475672 L-Alanine (N) nitrogen source L-Alanine 20 mM NA NA NA BPHYT_RS13770 BPHYT_RS13770 RND transporter set2IT056 -6.5230749267533 -17.0331792732392 LB, pH4 pH NA NA NA NA BPHYT_RS13770 BPHYT_RS13770 RND transporter set2IT057 -5.86679680310874 -12.6049442443701 LB, pH4 pH NA NA NA NA BPHYT_RS13775 BPHYT_RS13775 fusaric acid resistance protein set2IT056 -3.74101601905598 -9.04525251517278 LB, pH4 pH NA NA NA NA BPHYT_RS13775 BPHYT_RS13775 fusaric acid resistance protein set2IT057 -2.9431471621721 -6.73782570801006 LB, pH4 pH NA NA NA NA BPHYT_RS13785 BPHYT_RS13785 membrane protein set2IT056 -5.34943581747495 -12.1889809293557 LB, pH4 pH NA NA NA NA BPHYT_RS13785 BPHYT_RS13785 membrane protein set2IT057 -4.88230159071359 -5.90012993788602 LB, pH4 pH NA NA NA NA BPHYT_RS13910 BPHYT_RS13910 5-dehydro-2-deoxygluconokinase set2IT074 -3.56624876975658 -10.625013597739 m-Inositol (C) carbon source m-Inositol 20 mM NA NA NA BPHYT_RS13920 BPHYT_RS13920 xylose isomerase set2IT074 -4.85395247257268 -10.7959785174119 m-Inositol (C) carbon source m-Inositol 20 mM NA NA NA BPHYT_RS13925 BPHYT_RS13925 5-deoxyglucuronate isomerase set2IT074 -3.68200839660292 -7.47950880223541 m-Inositol (C) carbon source m-Inositol 20 mM NA NA NA BPHYT_RS14050 BPHYT_RS14050 UDP pyrophosphate phosphatase set2IT056 -7.96461724021262 -6.23502154491423 LB, pH4 pH NA NA NA NA BPHYT_RS14050 BPHYT_RS14050 UDP pyrophosphate phosphatase set2IT057 -5.50858948966128 -8.52098911835818 LB, pH4 pH NA NA NA NA BPHYT_RS14055 BPHYT_RS14055 aldose epimerase set3IT075 -1.53972805609959 -8.52897436488126 NAG (N) nitrogen source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS14055 BPHYT_RS14055 aldose epimerase set1IT028 -2.73546660450281 -15.6949934048381 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS14105 BPHYT_RS14105 exopolyphosphatase set2IT080 -1.74496322031308 -11.2089288146779 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS14105 BPHYT_RS14105 exopolyphosphatase set2IT079 -1.31841367744547 -9.78197022835257 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS14105 BPHYT_RS14105 exopolyphosphatase set3IT071 -1.40542606144831 -8.88128125185419 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS14260 BPHYT_RS14260 trehalose-6-phosphate synthase set1IT045 1.28551539818174 9.50323525179418 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS14480 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C set3IT074 -1.22453086521999 -5.72852653975087 Putrescine (N) nitrogen source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS14480 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C set1IT027 -1.64440198654115 -8.07499493008775 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS14490 BPHYT_RS14490 molybdenum cofactor biosynthesis protein MoeA set2IT056 -1.40361983378813 -10.0628730318045 LB, pH4 pH NA NA NA NA BPHYT_RS14490 BPHYT_RS14490 molybdenum cofactor biosynthesis protein MoeA set2IT057 -1.09223182200792 -8.78788691351856 LB, pH4 pH NA NA NA NA BPHYT_RS14495 BPHYT_RS14495 molybdopterin-guanine dinucleotide biosynthesis protein A set2IT056 -1.64583476146812 -6.68817247940584 LB, pH4 pH NA NA NA NA BPHYT_RS14495 BPHYT_RS14495 molybdopterin-guanine dinucleotide biosynthesis protein A set2IT057 -1.44926989745533 -7.34394166661209 LB, pH4 pH NA NA NA NA BPHYT_RS14655 BPHYT_RS14655 Fis family transcriptional regulator set2IT073 1.84134645926533 13.4048960975116 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS14655 BPHYT_RS14655 Fis family transcriptional regulator set2IT070 1.6973094782694 12.6360730562766 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS14715 BPHYT_RS14715 molybdenum cofactor biosynthesis protein MogA set2IT056 -1.47883469558734 -7.6022514471487 LB, pH4 pH NA NA NA NA BPHYT_RS14715 BPHYT_RS14715 molybdenum cofactor biosynthesis protein MogA set2IT057 -1.2278846514947 -5.75480019486719 LB, pH4 pH NA NA NA NA BPHYT_RS14795 BPHYT_RS14795 acyl-CoA dehydrogenase set1IT017 -2.67492603597284 -11.5733609702732 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS14905 BPHYT_RS14905 histidinol-phosphate aminotransferase set1IT024 -1.21914324436176 -5.41412008897869 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS15010 BPHYT_RS15010 cation transporter set1IT031 -4.36420518379248 -5.92406122754314 Cobalt chloride 0.25 mM stress Cobalt chloride hexahydrate 0.25 mM NA NA NA BPHYT_RS15450 BPHYT_RS15450 chromosome partitioning protein set1IT021 -1.2407017110332 -7.08725300032733 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS15470 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase set1IT036 -2.03039809238565 -10.6083393050533 Thallium(I) acetate 0.01 mg/ml stress Thallium(I) acetate 0.01 mg/ml NA NA NA BPHYT_RS15470 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase set1IT027 -2.68036580794939 -11.5066616085049 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS15470 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase set3IT074 -1.73008422791751 -6.89266980287833 Putrescine (N) nitrogen source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS15470 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase set2IT080 2.25367764816729 14.8415039046641 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS15575 BPHYT_RS15575 CDP-6-deoxy-delta-3,4-glucoseen reductase set1IT045 -1.93964887987551 -8.27406077010389 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein set1IT021 -1.6236583126716 -8.43779627879909 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein set3IT063 -2.63278145825016 -10.7622845632098 L-Proline (N) nitrogen source L-Proline 20 mM NA NA NA BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein set1IT020 -2.17857384231823 -10.3992166601278 L-Asparagine (C) carbon source L-Asparagine 20 mM NA NA NA BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein set1IT022 -2.6645929434888 -9.86901897011911 L-Proline (C) carbon source L-Proline 20 mM NA NA NA BPHYT_RS15715 BPHYT_RS15715 ATP-dependent Clp protease adapter protein ClpS set1IT045 1.5091404260731 7.63405633282374 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS15730 BPHYT_RS15730 isocitrate dehydrogenase set2IT073 1.34341650882408 10.0226431877992 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS15780 BPHYT_RS15780 ABC transporter ATP-binding protein set2IT079 -1.15831941535598 -8.01774662926325 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS15795 BPHYT_RS15795 hypothetical protein set2IT079 -1.72040245701705 -7.57000145645354 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS15800 BPHYT_RS15800 GntR family transcriptional regulator set2IT079 7.00826383855296 38.294066108805 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS15805 BPHYT_RS15805 carnitine dehydratase set2IT079 -1.15154968773379 -5.57165489874498 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS16025 BPHYT_RS16025 kynurenine formamidase set1IT025 -5.50676890769206 -7.51916415812302 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS16030 BPHYT_RS16030 kynureninase set1IT025 -4.57508289116758 -8.17685895086145 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS16045 BPHYT_RS16045 actin set2IT073 3.82806517573879 19.9955179241791 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS16050 BPHYT_RS16050 iditol 2-dehydrogenase set2IT073 -2.75207602996268 -7.8053834737662 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS16060 BPHYT_RS16060 ribonucleotide-diphosphate reductase subunit alpha set2IT073 -3.17965479715619 -6.68250320707842 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS16080 BPHYT_RS16080 xylulokinase set2IT070 -4.44233956786158 -9.08284427970281 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS16080 BPHYT_RS16080 xylulokinase set2IT073 -2.27676599701362 -6.50635873152325 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS16095 BPHYT_RS16095 sugar ABC transporter ATP-binding protein set1IT016 -4.14952176326963 -9.6589961969899 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS16105 BPHYT_RS16105 mannitol ABC transporter permease set1IT016 -3.45869629141139 -7.61230852643331 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS16110 BPHYT_RS16110 sugar ABC transporter permease set1IT016 -3.98405679711464 -9.43554985873763 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS16115 BPHYT_RS16115 sugar ABC transporter substrate-binding protein set1IT016 -3.77916163182298 -12.1631316059051 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS16120 BPHYT_RS16120 sorbitol dehydrogenase set1IT016 -3.85058179679359 -12.6372892720046 D-Sorbitol (C) carbon source D-Sorbitol 20 mM NA NA NA BPHYT_RS16225 BPHYT_RS16225 D-alanyl-D-alanine carboxypeptidase set1IT041 -1.19600865332805 -7.98803833002295 Chloride 200 mM stress Sodium Chloride 200 mM NA NA NA BPHYT_RS16280 BPHYT_RS16280 branched-chain amino acid ABC transporter permease set1IT003 -1.73873360090546 -10.2589220181187 Sucrose (C) carbon source Sucrose 20 mM NA NA NA BPHYT_RS16285 BPHYT_RS16285 branched-chain amino acid aminotransferase set3IT065 -2.38465434085103 -6.26226072729875 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS16405 BPHYT_RS16405 galactonate dehydratase set1IT005 -2.58372937554702 -12.1654434946971 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16440 BPHYT_RS16440 hemolysin D set1IT031 -2.86166500595887 -14.0468075251331 Cobalt chloride 0.25 mM stress Cobalt chloride hexahydrate 0.25 mM NA NA NA BPHYT_RS16505 BPHYT_RS16505 HAD family hydrolase set2IT079 -2.0211262296717 -6.02497965959983 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS16555 BPHYT_RS16555 cation transporter set2IT049 -1.2066803699632 -5.57425125555267 Dimethyl Sulfoxide 6 vol% stress Dimethyl Sulfoxide 6 vol% NA NA NA BPHYT_RS16575 BPHYT_RS16575 Xaa-Pro aminopeptidase set2IT077 -1.12332079666574 -7.79671841403945 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS16695 BPHYT_RS16695 glutamate/aspartate ABC transporter permease GltJ set3IT058 -1.2658300994673 -5.96052929379809 L-Glutamic (N) nitrogen source L-Glutamic acid monopotassium salt monohydrate 20 mM NA NA NA BPHYT_RS16720 BPHYT_RS16720 gluconate kinase set1IT008 -5.58718654713359 -5.07632167995927 D-Gluconic Acid (C) carbon source D-Gluconic Acid sodium salt 20 mM NA NA NA BPHYT_RS16725 BPHYT_RS16725 permease set1IT008 -4.07781227074442 -12.8508194388721 D-Gluconic Acid (C) carbon source D-Gluconic Acid sodium salt 20 mM NA NA NA BPHYT_RS16740 BPHYT_RS16740 transcriptional regulator set1IT008 1.89473796058072 13.8032859978846 D-Gluconic Acid (C) carbon source D-Gluconic Acid sodium salt 20 mM NA NA NA BPHYT_RS16895 BPHYT_RS16895 competence damage-inducible protein A set3IT056 -1.11494818241614 -5.164839098626 L-Lysine (N) nitrogen source L-Lysine 20 mM NA NA NA BPHYT_RS16915 BPHYT_RS16915 gluconolaconase set1IT004 -2.03190562528252 -9.78856138022762 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA BPHYT_RS16920 BPHYT_RS16920 3-oxoacyl-ACP reductase set1IT004 -2.2894369467622 -6.99600133245435 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA BPHYT_RS16920 BPHYT_RS16920 3-oxoacyl-ACP reductase set1IT005 -2.10660195799207 -5.74395427263148 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16925 BPHYT_RS16925 arabinose ABC transporter permease set1IT005 -1.87918662160568 -8.25957287446471 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16930 BPHYT_RS16930 arabinose ABC transporter ATP-binding protein set1IT005 -2.12975481320814 -10.9892016649072 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16935 BPHYT_RS16935 arabinose ABC transporter substrate-binding protein set1IT005 -2.10270953675299 -8.16492148859972 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16940 BPHYT_RS16940 short-chain dehydrogenase set1IT005 -2.20557824419234 -6.77870572380036 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16945 BPHYT_RS16945 2-dehydro-3-deoxy-6-phosphogalactonate aldolase set1IT005 -6.24304014815495 -6.96903172518219 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16955 BPHYT_RS16955 IclR family transcriptional regulator set1IT005 -3.13492233060226 -10.6241885493259 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA BPHYT_RS16990 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase set2IT052 3.43962951091502 18.8290552280318 Cephalothin 2 mg/ml stress Cephalothin sodium salt 2 mg/ml NA NA NA BPHYT_RS16990 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase set1IT034 1.56265445853316 5.12444917078327 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS17185 BPHYT_RS17185 N-acetylglutamate synthase set2IT068 1.49877712178675 8.42052986862993 LB, 37C temperature NA NA NA NA BPHYT_RS17335 BPHYT_RS17335 enoyl-CoA hydratase set3IT066 -2.52874254221606 -7.83285664040443 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS17335 BPHYT_RS17335 enoyl-CoA hydratase set1IT024 -6.34237249958275 -11.4197403999201 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS17340 BPHYT_RS17340 aldehyde dehydrogenase set1IT024 -6.29407653206219 -9.61710999893991 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS17340 BPHYT_RS17340 aldehyde dehydrogenase set3IT066 -3.97627836438415 -9.03495584746839 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS17340 BPHYT_RS17340 aldehyde dehydrogenase set2IT053 1.02210172347847 6.61473856579174 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS17345 BPHYT_RS17345 acetyl-CoA acetyltransferase set1IT024 -1.85691712314814 -6.70980072152597 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS17540 BPHYT_RS17540 amino acid:proton symporter set1IT020 -1.58534152822626 -12.2264352674275 L-Asparagine (C) carbon source L-Asparagine 20 mM NA NA NA BPHYT_RS17540 BPHYT_RS17540 amino acid:proton symporter set1IT021 -1.9147200089076 -13.698152980973 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS17705 BPHYT_RS17705 histidinol-phosphate aminotransferase set1IT045 1.11436610523132 9.15980253056992 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS17725 BPHYT_RS17725 BolA family transcriptional regulator set2IT073 -1.45236255416682 -6.05024952578525 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS17730 BPHYT_RS17730 metal-dependent hydrolase set2IT053 1.577443889348 11.123792289336 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS17735 BPHYT_RS17735 ABC transporter ATP-binding protein set2IT053 1.53768869839129 8.58770225303411 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS17750 BPHYT_RS17750 VacJ family lipoprotein set1IT045 1.12041418406207 8.89710994633328 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS17865 BPHYT_RS17865 membrane protein set2IT070 -1.78700752297465 -6.79219611499867 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS18250 BPHYT_RS18250 phenylacetate-CoA oxygenase subunit PaaA set1IT024 -6.04733934021836 -8.28893194129853 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS18250 BPHYT_RS18250 phenylacetate-CoA oxygenase subunit PaaA set3IT066 -3.02005069215979 -8.04877861050294 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS18260 BPHYT_RS18260 phenylacetic acid degradation protein set3IT066 -2.35118511407798 -8.14459056963069 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS18270 BPHYT_RS18270 phenylacetic acid degradation protein set3IT066 -3.2439100693358 -8.15436083417109 L-Phenylalanine (N) nitrogen source L-Phenylalanine 20 mM NA NA NA BPHYT_RS18270 BPHYT_RS18270 phenylacetic acid degradation protein set1IT024 -6.41981184667329 -8.80329567633717 L-Phenylalanine (C) carbon source L-Phenylalanine 20 mM NA NA NA BPHYT_RS18310 BPHYT_RS18310 malic enzyme set1IT021 -1.53443084996933 -7.49428406150508 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS18580 BPHYT_RS18580 short-chain dehydrogenase set3IT068 -1.44876749029508 -5.06108577639526 D-Alanine (N) nitrogen source D-Alanine 20 mM NA NA NA BPHYT_RS18620 BPHYT_RS18620 transcriptional regulator set1IT021 -1.66240660510115 -5.59529130805717 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS18625 BPHYT_RS18625 allophanate hydrolase set1IT021 -1.22344986645342 -6.41136591425104 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS19020 BPHYT_RS19020 transcriptional regulator set1IT045 1.41347567560068 11.9241249597713 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS19055 BPHYT_RS19055 COF family hydrolase set2IT079 -2.34485696714941 -13.4483532089632 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS19320 BPHYT_RS19320 glycine cleavage system protein T set2IT077 -2.36651226862427 -8.40210403235938 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS19330 BPHYT_RS19330 glycine dehydrogenase (decarboxylating) set1IT017 -1.29330941266255 -5.52479954858831 Tween 20 (C) carbon source Tween 20 0.5 vol% NA NA NA BPHYT_RS19330 BPHYT_RS19330 glycine dehydrogenase (decarboxylating) set4IT038 -1.43169496355555 -6.56717520535427 L-Serine nutrient L-Serine 1 mM NA NA NA BPHYT_RS19330 BPHYT_RS19330 glycine dehydrogenase (decarboxylating) set4IT037 -1.34606469507069 -6.72313996315949 L-Serine nutrient L-Serine 1 mM NA NA NA BPHYT_RS19330 BPHYT_RS19330 glycine dehydrogenase (decarboxylating) set2IT077 -1.92941526377174 -8.59080459819036 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS19350 BPHYT_RS19350 amino acid ABC transporter substrate-binding protein set1IT043 -1.6280301340453 -6.99369916693163 Benzethonium chloride 0.0016 mM stress Benzethonium chloride 0.0016 mM NA NA NA BPHYT_RS19535 BPHYT_RS19535 XRE family transcriptional regulator set2IT057 -1.39561343443589 -5.40991667457159 LB, pH4 pH NA NA NA NA BPHYT_RS19535 BPHYT_RS19535 XRE family transcriptional regulator set2IT056 -1.24662176706884 -7.44376147638902 LB, pH4 pH NA NA NA NA BPHYT_RS19535 BPHYT_RS19535 XRE family transcriptional regulator set2IT077 -2.95654051821829 -9.36591203958467 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS19540 BPHYT_RS19540 sensor histidine kinase set2IT056 -1.08675580337737 -6.89903508174218 LB, pH4 pH NA NA NA NA BPHYT_RS19540 BPHYT_RS19540 sensor histidine kinase set2IT077 -2.07860246339846 -9.95470247091379 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS19705 BPHYT_RS19705 LysR family transcriptional regulator set1IT004 -2.69169272215282 -9.74480509335775 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA BPHYT_RS19720 BPHYT_RS19720 arabinose ABC transporter ATP-binding protein set1IT004 -2.38137699240313 -9.2143054120231 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA BPHYT_RS19730 BPHYT_RS19730 dihydroxy-acid dehydratase set1IT004 -2.79081726572714 -10.7822009207079 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA BPHYT_RS19975 BPHYT_RS19975 IclR family transcriptional regulator set1IT021 -1.14711928717847 -7.49037744378635 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS19975 BPHYT_RS19975 IclR family transcriptional regulator set2IT072 4.20133016848901 29.1831767108693 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS20100 BPHYT_RS20100 sensor histidine kinase set2IT072 1.44587818723244 5.05433520803544 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS20295 BPHYT_RS20295 ligand-gated channel set2IT080 -1.92039701042987 -13.5855882853034 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS20305 BPHYT_RS20305 hypothetical protein set2IT072 -1.32309514205662 -5.07458830432622 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS20675 BPHYT_RS20675 LysR family transcriptional regulator set1IT007 -3.54192958796797 -7.25258076674211 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA BPHYT_RS20685 BPHYT_RS20685 ribose ABC transporter ATPase set1IT007 -2.77925307306899 -6.91906519714135 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA BPHYT_RS21285 BPHYT_RS21285 hypothetical protein set2IT080 1.36006179110379 5.80031376404676 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS21555 BPHYT_RS21555 beta alanine--pyruvate aminotransferase set3IT077 -2.71645230681064 -6.47582020757094 Uridine (N) nitrogen source Uridine 20 mM NA NA NA BPHYT_RS21560 BPHYT_RS21560 GntR family transcriptional regulator set2IT074 -2.37218059268792 -7.77380528334454 m-Inositol (C) carbon source m-Inositol 20 mM NA NA NA BPHYT_RS22060 BPHYT_RS22060 amino acid transporter set2IT080 -1.42443642340798 -10.8151373881676 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS22060 BPHYT_RS22060 amino acid transporter set3IT056 1.15179828315272 8.31674619771256 L-Lysine (N) nitrogen source L-Lysine 20 mM NA NA NA BPHYT_RS22235 BPHYT_RS22235 sensor histidine kinase set1IT012 -1.59122432702076 -7.4546468706696 pyruvate (C) carbon source Sodium pyruvate 20 mM NA NA NA BPHYT_RS22240 BPHYT_RS22240 hypothetical protein set1IT012 -1.77273938723087 -10.9354047342157 pyruvate (C) carbon source Sodium pyruvate 20 mM NA NA NA BPHYT_RS22245 BPHYT_RS22245 sodium:solute symporter set1IT009 -1.02464180408727 -6.66131602634699 D-Lactate (C) carbon source Sodium D-Lactate 20 mM NA NA NA BPHYT_RS22245 BPHYT_RS22245 sodium:solute symporter set1IT012 -1.71506680515267 -10.2523193283354 pyruvate (C) carbon source Sodium pyruvate 20 mM NA NA NA BPHYT_RS22245 BPHYT_RS22245 sodium:solute symporter set1IT026 -1.29512080988023 -8.45568681289582 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS22375 BPHYT_RS22375 4-hydroxybenzoyl-CoA thioesterase set3IT071 -3.87998423147214 -9.65515420377993 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS22380 BPHYT_RS22380 3-hydroxybutyryl-CoA dehydrogenase set3IT071 -3.29460355226127 -5.65104555652746 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS22385 BPHYT_RS22385 hypothetical protein set3IT071 -3.48039675789731 -11.7559880883638 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS22390 BPHYT_RS22390 glycine/betaine ABC transporter substrate-binding protein set3IT071 -3.18342588102924 -9.25924035451364 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS22395 BPHYT_RS22395 AraC family transcriptional regulator set3IT071 -2.78216513955468 -5.5360760334656 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS22435 BPHYT_RS22435 4-aminobutyrate aminotransferase set1IT027 -1.66762805965876 -5.7183192297645 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS22485 BPHYT_RS22485 NADP-dependent aryl-alcohol dehydrogenase set2IT079 1.56501202100351 7.53607519776991 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA BPHYT_RS22510 BPHYT_RS22510 MexE family multidrug efflux RND transporter periplasmic adaptor subunit set2IT083 -2.2447769161752 -7.49128778867825 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS22515 BPHYT_RS22515 multidrug efflux RND transporter permease subunit set1IT043 -2.52752889208905 -10.5061067765499 Benzethonium chloride 0.0016 mM stress Benzethonium chloride 0.0016 mM NA NA NA BPHYT_RS22515 BPHYT_RS22515 multidrug efflux RND transporter permease subunit set2IT083 -1.72868868227428 -9.37325378862988 A22 0.005 mg/ml stress MreB Perturbing Compound A22 0.005 mg/ml NA NA NA BPHYT_RS22520 BPHYT_RS22520 RND transporter set1IT043 -2.05779022468192 -5.73463041425795 Benzethonium chloride 0.0016 mM stress Benzethonium chloride 0.0016 mM NA NA NA BPHYT_RS22555 BPHYT_RS22555 transcriptional regulator set1IT045 -1.41662601953798 -5.7485231163046 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS22695 BPHYT_RS22695 TetR family transcriptional regulator set1IT021 -1.4455787985284 -7.59502452956763 L-Glutamine (C) carbon source L-Glutamine 20 mM NA NA NA BPHYT_RS22965 BPHYT_RS22965 ligand-gated channel protein set2IT052 1.06098992702844 8.3403828839841 Cephalothin 2 mg/ml stress Cephalothin sodium salt 2 mg/ml NA NA NA BPHYT_RS23160 BPHYT_RS23160 glutamine synthetase set3IT074 -3.73924419758922 -5.06462897033585 Putrescine (N) nitrogen source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS23160 BPHYT_RS23160 glutamine synthetase set1IT027 -3.97114656101182 -5.20228282849704 Putrescine (C) carbon source Putrescine Dihydrochloride 20 mM NA NA NA BPHYT_RS23705 BPHYT_RS23705 hypothetical protein set1IT045 1.52717941640272 11.5844541271457 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS23740 BPHYT_RS23740 AraC family transcriptional regulator set2IT057 -1.72841769044115 -8.20955157405598 LB, pH4 pH NA NA NA NA BPHYT_RS23740 BPHYT_RS23740 AraC family transcriptional regulator set2IT056 -2.48968002521597 -8.69136075201281 LB, pH4 pH NA NA NA NA BPHYT_RS23740 BPHYT_RS23740 AraC family transcriptional regulator set2IT053 -2.69212498399157 -9.55131558042368 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS23740 BPHYT_RS23740 AraC family transcriptional regulator set1IT045 -3.90284027492451 -9.80647976572993 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS23985 BPHYT_RS23985 carbohydrate porin set2IT057 -5.17157949871308 -9.38098723064148 LB, pH4 pH NA NA NA NA BPHYT_RS23985 BPHYT_RS23985 carbohydrate porin set2IT056 -4.44886951436966 -8.49856750351412 LB, pH4 pH NA NA NA NA BPHYT_RS23985 BPHYT_RS23985 carbohydrate porin set2IT080 -1.10163222177109 -5.16469868223999 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS23990 BPHYT_RS23990 N-hydroxyarylamine O-acetyltransferase set2IT080 5.25347964777592 12.9794025698745 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS24000 BPHYT_RS24000 ABC transporter substrate-binding protein set1IT019 -1.2137685044011 -5.7246266759757 L-Histidine (C) carbon source L-Histidine 20 mM NA NA NA BPHYT_RS24155 BPHYT_RS24155 5-dehydro-4-deoxyglucarate dehydratase set1IT015 -2.15562457272085 -6.74874474802689 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA BPHYT_RS24370 BPHYT_RS24370 glucose-6-phosphate 1-dehydrogenase set1IT028 -1.48873900520611 -6.00553764421879 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA BPHYT_RS24905 BPHYT_RS24905 hypothetical protein set2IT056 -1.08642008188618 -6.18401581809674 LB, pH4 pH NA NA NA NA BPHYT_RS24905 BPHYT_RS24905 hypothetical protein set2IT057 -1.04456890873412 -7.25289421605328 LB, pH4 pH NA NA NA NA BPHYT_RS24910 BPHYT_RS24910 NADH:ubiquinone oxidoreductase subunit M set2IT057 -1.35900638425289 -8.29557877431968 LB, pH4 pH NA NA NA NA BPHYT_RS24910 BPHYT_RS24910 NADH:ubiquinone oxidoreductase subunit M set2IT056 -1.07832612711623 -6.81384586694387 LB, pH4 pH NA NA NA NA BPHYT_RS25105 BPHYT_RS25105 sarcosine oxidase subunit beta set3IT071 -2.38798775285382 -5.15283072900663 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS25115 BPHYT_RS25115 sarcosine oxidase subunit alpha set3IT071 -3.09132781989437 -7.20678895826368 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS25205 BPHYT_RS25205 electron transfer flavoprotein subunit alpha set3IT071 -3.93034121956887 -12.9462965414426 Carnitine Hydrochloride (N) nitrogen source Carnitine Hydrochloride 20 mM NA NA NA BPHYT_RS26385 BPHYT_RS26385 glutamine amidotransferase set2IT077 1.67842594108461 6.03964025743695 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS26405 BPHYT_RS26405 glycogen synthase set2IT077 1.07349528604691 6.28688399719729 Gly-Glu (C) carbon source Gly-Glu 20 mM NA NA NA BPHYT_RS26730 BPHYT_RS26730 membrane protein set1IT040 -1.26528997293909 -5.36722129888868 Polymyxin B sulfate 0.0625 mg/ml stress Polymyxin B sulfate 0.0625 mg/ml NA NA NA BPHYT_RS26870 BPHYT_RS26870 cytochrome C551 set2IT086 1.26364154042339 5.35909670542811 inner cut, LB soft agar motility assay motility Agar 3 g/L NA NA NA BPHYT_RS26970 BPHYT_RS26970 4Fe-4S ferredoxin set1IT006 -1.71639528056674 -5.97242083347989 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS26970 BPHYT_RS26970 4Fe-4S ferredoxin set2IT071 -2.59637955797039 -6.33301968155566 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS26970 BPHYT_RS26970 4Fe-4S ferredoxin set1IT010 -5.25876911771552 -10.728272445025 L-Lactate (C) carbon source Sodium L-Lactate 20 mM NA NA NA BPHYT_RS26970 BPHYT_RS26970 4Fe-4S ferredoxin set1IT011 -1.57432040212373 -6.0001908468043 D,L-Lactate (C) carbon source Sodium D,L-Lactate 20 mM NA NA NA BPHYT_RS26990 BPHYT_RS26990 GntR family transcriptional regulator set1IT010 1.30765808352799 6.40178813455396 L-Lactate (C) carbon source Sodium L-Lactate 20 mM NA NA NA BPHYT_RS27100 BPHYT_RS27100 RNase II stability modulator set2IT073 -2.53912484093589 -9.20631599276991 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS27100 BPHYT_RS27100 RNase II stability modulator set2IT070 -2.46137226258692 -10.153323359047 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS28235 BPHYT_RS28235 short-chain dehydrogenase set1IT006 -2.8664775818128 -5.18039643813058 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS29740 BPHYT_RS29740 2-aminoethylphosphonate aminotransferase set2IT053 -2.26486887457823 -6.61455694350524 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS29740 BPHYT_RS29740 2-aminoethylphosphonate aminotransferase set1IT045 -3.53092986190106 -6.28445802562585 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS29740 BPHYT_RS29740 2-aminoethylphosphonate aminotransferase set2IT056 -3.08407560163603 -7.40747405947827 LB, pH4 pH NA NA NA NA BPHYT_RS29740 BPHYT_RS29740 2-aminoethylphosphonate aminotransferase set2IT057 -2.26440744934825 -6.51087357213088 LB, pH4 pH NA NA NA NA BPHYT_RS31815 BPHYT_RS31815 hypothetical protein set2IT073 -2.49265669689521 -6.39253177943287 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS32650 BPHYT_RS32650 aldehyde dehydrogenase set3IT056 -3.8145390525727 -8.7134403148919 L-Lysine (N) nitrogen source L-Lysine 20 mM NA NA NA BPHYT_RS32700 BPHYT_RS32700 membrane protein set3IT065 -2.09337482076471 -5.8785082726883 L-Isoleucine (N) nitrogen source L-Isoleucine 20 mM NA NA NA BPHYT_RS32825 BPHYT_RS32825 xylose isomerase set2IT070 -4.52889627364904 -6.25806128440858 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA BPHYT_RS33035 BPHYT_RS33035 murein transglycosylase set2IT089 2.04239031008773 5.57310068239794 outer cut, LB soft agar motility assay motility Agar 3 g/L NA NA NA BPHYT_RS33185 BPHYT_RS33185 methyltransferase type 11 set1IT026 -2.3941305540432 -6.83968400388969 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS33220 BPHYT_RS33220 group 1 glycosyl transferase set1IT026 -1.40163089884969 -7.01536430317766 D-Alanine (C) carbon source D-Alanine 20 mM NA NA NA BPHYT_RS33590 BPHYT_RS33590 Rieske (2Fe-2S) protein set1IT045 -1.24172102662007 -6.92216638492565 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS33685 BPHYT_RS33685 molybdate ABC transporter substrate-binding protein set2IT056 -1.09651984802139 -7.02307184450542 LB, pH4 pH NA NA NA NA BPHYT_RS33685 BPHYT_RS33685 molybdate ABC transporter substrate-binding protein set2IT057 -1.16641907748353 -8.07776933360195 LB, pH4 pH NA NA NA NA BPHYT_RS33740 BPHYT_RS33740 hypothetical protein set2IT053 1.21742674623729 6.62755808281103 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS33820 BPHYT_RS33820 histidine kinase set2IT090 1.54691752910344 8.09431670068478 outer cut, LB soft agar motility assay motility Agar 3 g/L NA NA NA BPHYT_RS33820 BPHYT_RS33820 histidine kinase set2IT091 1.46639089880194 10.1630503560149 outer cut, LB soft agar motility assay motility Agar 3 g/L NA NA NA BPHYT_RS33885 BPHYT_RS33885 tRNA pseudouridine synthase A set2IT053 1.61308074685496 13.1617701451895 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS33980 BPHYT_RS33980 aconitate hydratase set1IT033 -1.14887407911376 -5.51517282048807 Paraquat dichloride 0.032 mg/ml stress Paraquat dichloride 0.032 mg/ml NA NA NA BPHYT_RS33980 BPHYT_RS33980 aconitate hydratase set1IT034 -1.81049358665054 -8.20473586376039 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS34175 BPHYT_RS34175 N-acylglucosamine 2-epimerase set2IT053 1.19483758429531 8.7608195104095 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS34210 BPHYT_RS34210 ureidoglycolate lyase set2IT071 -4.63536800992287 -9.37814650427165 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS34210 BPHYT_RS34210 ureidoglycolate lyase set1IT006 -5.60185722959937 -7.67415936860262 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS34215 BPHYT_RS34215 oxidoreductase set2IT071 -5.08875755612425 -8.13473585630141 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS34225 BPHYT_RS34225 aldo/keto reductase set2IT071 -5.10890259676941 -8.49844406889904 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS34225 BPHYT_RS34225 aldo/keto reductase set1IT006 -4.56769481011398 -7.31769684055278 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS34230 BPHYT_RS34230 hydrolase set2IT071 -4.74147691543128 -8.27201475692946 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS34230 BPHYT_RS34230 hydrolase set1IT006 -2.32292586207459 -8.93230466581601 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS34245 BPHYT_RS34245 multidrug ABC transporter ATP-binding protein set1IT006 -2.52447560189095 -5.48463865826217 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS34250 BPHYT_RS34250 ABC transporter substrate-binding protein set1IT006 -2.89097397718867 -7.46457797905348 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA BPHYT_RS34250 BPHYT_RS34250 ABC transporter substrate-binding protein set2IT073 -2.33451840430024 -7.25081979823518 Xylitol (C) carbon source Xylitol 20 mM NA NA NA BPHYT_RS34250 BPHYT_RS34250 ABC transporter substrate-binding protein set2IT071 -5.98550954260906 -9.45715575677578 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA BPHYT_RS34660 BPHYT_RS34660 DNA-binding protein set2IT080 -1.90665127993377 -8.44262220687873 Nickel (II) chloride 1 mM stress Nickel (II) chloride hexahydrate 1 mM NA NA NA BPHYT_RS34825 BPHYT_RS34825 4-hydroxy-3-methylbut-2-enyl diphosphate reductase set2IT056 -1.46013966724928 -6.96299408761674 LB, pH4 pH NA NA NA NA BPHYT_RS34825 BPHYT_RS34825 4-hydroxy-3-methylbut-2-enyl diphosphate reductase set1IT045 -1.88358121498638 -9.87071610423456 Bacitracin 0.25 mg/ml stress Bacitracin 0.25 mg/ml NA NA NA BPHYT_RS34825 BPHYT_RS34825 4-hydroxy-3-methylbut-2-enyl diphosphate reductase set2IT057 -1.23184400524843 -5.48585767690433 LB, pH4 pH NA NA NA NA BPHYT_RS34825 BPHYT_RS34825 4-hydroxy-3-methylbut-2-enyl diphosphate reductase set2IT053 -1.45016230589754 -8.96485465178163 Lomefloxacin 0.001 mM stress Lomefloxacin hydrochloride 0.001 mM NA NA NA BPHYT_RS35155 BPHYT_RS35155 TonB-denpendent receptor set3IT070 -1.03855168259688 -5.88215288125815 L-Citrulline (N) nitrogen source L-Citrulline 20 mM NA NA NA BPHYT_RS35385 BPHYT_RS35385 GntR family transcriptional regulator set2IT072 1.62592412687373 10.4296765665306 Trisodium citrate (C) carbon source Trisodium citrate dihydrate 20 mM NA NA NA BPHYT_RS35445 BPHYT_RS35445 2-aminobenzoate-CoA ligase set1IT025 -2.04240141627337 -6.64799200185604 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS35460 BPHYT_RS35460 acyl-CoA dehydrogenase set1IT025 -3.78608533088467 -7.38940551715739 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS35465 BPHYT_RS35465 enoyl-CoA hydratase set1IT025 -2.44777987077573 -5.0279312929149 L-Tryptophan (C) carbon source L-Tryptophan 12.5 mM NA NA NA BPHYT_RS36300 BPHYT_RS36300 hypothetical protein set1IT033 1.62271945374494 8.541571427584 Paraquat dichloride 0.032 mg/ml stress Paraquat dichloride 0.032 mg/ml NA NA NA BPHYT_RS36300 BPHYT_RS36300 hypothetical protein set1IT034 1.88828383138468 7.40936779349697 Paraquat dichloride 0.064 mg/ml stress Paraquat dichloride 0.064 mg/ml NA NA NA BPHYT_RS36555 BPHYT_RS36555 hypothetical protein set2IT090 1.46497842923092 7.89911875922036 outer cut, LB soft agar motility assay motility Agar 3 g/L NA NA NA