A Latent Variable Model for Chemogenomic Profiling

Patrick Flaherty, Guri Giaever, Jochen Kumm, Michael I. Jordan, Adam P. Arkin

Supplementary Information

Model Derivation

This is the derivation of the Labeled Latent Dirichlet Allocation Model.
The variable names correspond to those described in the Methods section of the paper. [pdf]

Hierarchical Clustering

This hierarchical clustering plot was generated in R.
The dendrogram was generated using agglomerative clustering on the correlation distance metric with average linkage clustering. [pdf]

Matlab Code

The code for llda is contained in this zip file.[zip]

Data Files